Package: hdf5r.Extra 0.0.6

hdf5r.Extra: Extensions for 'HDF5' R Interfaces

Some methods to manipulate 'HDF5' files, extending the 'hdf5r' package. Reading and writing R objects to 'HDF5' formats follow the specification of 'AnnData' <https://anndata.readthedocs.io/en/latest/fileformat-prose.html>.

Authors:Yuchen Li [aut, cre]

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hdf5r.Extra/json (API)
NEWS

# Install 'hdf5r.Extra' in R:

install.packages('hdf5r.Extra', repos = c('https://ycli1995.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ycli1995/hdf5r.extra/issues

On CRAN:

30 exports 1 stars 1.23 score 38 dependencies 1 scripts 910 downloads

Last updated 5 months agofrom:a09078234a. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 16 2024
R-4.5-win	OK	Sep 16 2024
R-4.5-linux	OK	Sep 16 2024
R-4.4-win	OK	Sep 16 2024
R-4.4-mac	OK	Sep 16 2024
R-4.3-win	OK	Sep 16 2024
R-4.3-mac	OK	Sep 16 2024

Exports:h5AbsLinkName h5Attr h5Attributes h5AttrNames h5Backup h5Class h5Copy h5CreateDataset h5CreateFile h5CreateGroup h5Delete h5DeleteAttr h5Dims h5Exists h5GuessDtype h5List h5MaxDims h5Move h5Open h5Overwrite h5Prep h5Read h5ReadDataset h5TryOpen h5Write h5WriteAttr h5WriteDataset h5WriteScalar is.H5D is.H5Group

Dependencies:backports bit bit64 checkmate cli colorspace dplyr easy.utils fansi farver fastmatch float generics glue hdf5r labeling lattice lifecycle magrittr Matrix MatrixExtra munsell pillar pkgconfig Polychrome R6 RColorBrewer Rcpp RhpcBLASctl rlang scales scatterplot3d tibble tidyselect utf8 vctrs viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Manipulate HDF5 attributes	H5-attributs h5Attr h5Attr.character h5Attr.H5D h5Attr.H5File h5Attr.H5Group h5Attributes h5Attributes.character h5Attributes.H5D h5Attributes.H5File h5Attributes.H5Group h5AttrNames h5AttrNames.character h5AttrNames.H5D h5AttrNames.H5File h5AttrNames.H5Group h5DeleteAttr h5DeleteAttr.character h5DeleteAttr.H5D h5DeleteAttr.H5File h5DeleteAttr.H5Group h5WriteAttr h5WriteAttr.character h5WriteAttr.H5D h5WriteAttr.H5File h5WriteAttr.H5Group
Get information of an HDF5 dataset	H5-dataset-info h5Dims h5Dims.character h5Dims.H5D h5Dims.H5File h5Dims.H5Group h5MaxDims h5MaxDims.character h5MaxDims.H5D h5MaxDims.H5File h5MaxDims.H5Group
Format an absolute path name for HDF5 link	h5AbsLinkName
Back up contents from one HDF5 file to another	h5Backup
Get the class of an HDF5 link	h5Class is.H5D is.H5Group
Copy an HDF5 link	h5Copy
Create a new empty HDF5 dataset	h5CreateDataset h5CreateDataset.character h5CreateDataset.H5File h5CreateDataset.H5Group
Create a new HDF5 file	h5CreateFile h5CreateFile.character
Create new HDF5 group	h5CreateGroup h5CreateGroup.character h5CreateGroup.H5File h5CreateGroup.H5Group
Delete an HDF5 link	h5Delete h5Delete.character h5Delete.H5File h5Delete.H5Group
Check existence of an HDF5 link	h5Exists h5Exists.character h5Exists.H5File h5Exists.H5Group
Guess an HDF5 Datatype	h5GuessDtype
List the contents of an HDF5 group	h5List h5List.character h5List.H5File h5List.H5Group
Move link in an HDF5 file	h5Move
Open an HDF5 file, file-handler or group object	h5Open h5Open.character h5Open.H5File h5Open.H5Group
Overwrite an existing HDF5 link	h5Overwrite
Prepare an R object to be written into HDF5 file	h5Prep h5Prep.default
Read data from an existing HDF5 link	h5Read h5Read.character h5Read.H5File h5Read.H5Group
Read data from an existing H5 dataset	h5ReadDataset h5ReadDataset.character h5ReadDataset.H5D h5ReadDataset.H5File h5ReadDataset.H5Group
Automatically retry opening HDF5 file	h5TryOpen
Write an R object to HDF5 file	h5Write h5Write.array h5Write.data.frame h5Write.default h5Write.dgCMatrix h5Write.dgRMatrix h5Write.factor h5Write.list
Write array-like data into an existing H5 dataset	h5WriteDataset h5WriteDataset.character h5WriteDataset.H5D h5WriteDataset.H5File h5WriteDataset.H5Group
Write a scalar into HDF5 file	h5WriteScalar h5WriteScalar.character h5WriteScalar.H5File h5WriteScalar.H5Group